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RNA-seq Data Analysis:A Practical Approach

Peer-reviewed

Korpelainen, Eija; Tuimala, Jarno; Somervuo, Panu Juhani; Huss, Mikael; Wong, Garry

CRC Press, Taylor & Francis Group

2014

Novel ZNF414 activity characterized by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data

Peer-reviewed

Open access

DOI

10.1016/j.bbagrm.2022.194811

Rodriguez-Martinez, Alejandra; Vuorinen, Elisa M.; Shcherban, Anastasia; Uusi-Mäkelä, Joonas; Rajala...

Biochimica et biophysica acta: gene regulatory mechanisms

2022

A survey of best practices for RNA-seq data analysis

Peer-reviewed

Open access

DOI

10.1186/s13059-016-0881-8

Conesa, Ana; Madrigal, Pedro; Tarazona, Sonia; Gomez-Cabrero, David; Cervera Taboada, Alejandra; McP...

Genome biology

2016

Prostate cancer gene regulatory network inferred from RNA-seq data

Peer-reviewed

Open access

DOI

10.2174/1389202919666181107122005

Moore, Daniel;Simoes, Ricardo de Matos;Dehmer, Matthias;Emmert-Streib, Frank

CURRENT GENOMICS

2019

Identifying differentially expressed transcripts from RNA-seq data with biological variation

Peer-reviewed

Open access

DOI

10.1093/bioinformatics/bts260

Glaus, Peter; Honkela, Antti; Rattray, Magnus

Bioinformatics

2012

Fast and accurate approximate inference of transcript expression from RNA-seq data

Peer-reviewed

DOI

10.1093/bioinformatics/btv483

Hensman, James; Papastamoulis, Panagiotis; Glaus, Peter; Honkela, Antti Juho Henrikki; Rattray, Magn...

Bioinformatics

2015

Assessing allele-specific expression across multiple tissues from RNA-seq read data

Peer-reviewed

DOI

10.1093/bioinformatics/btv074

Pirinen, Matti; Lappalainen, Tuuli; Zaitlen, Noah A.; Dermitzakis, Emmanouil T.; Donnelly, Peter; Mc...

Bioinformatics

2015

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability

Peer-reviewed

Open access

DOI

10.1371/journal.pone.0126545

Uziela, Karolis; Honkela, Antti

PLoS One

2015

Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments

Peer-reviewed

Open access

DOI

10.1093/bioinformatics/btab486

BinTayyash, Nuha; Georgaka, Sokratia; John, S. T.; Ahmed, Sumon; Boukouvalas, Alexis; Hensman, James...

Bioinformatics

2021

Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline

Peer-reviewed

DOI

10.1093/bib/bbv069

Rahmatallah, Yasir;Emmert-Streib, Frank;Glazko, Galina

Briefings in Bioinformatics

2015

RNA-seq Data Analysis:A Practical Approach

Peer-reviewed

2014

Novel ZNF414 activity characterized by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data

Peer-reviewed

Open access

DOI

10.1016/j.bbagrm.2022.194811

2022

A survey of best practices for RNA-seq data analysis

Peer-reviewed

Open access

DOI

10.1186/s13059-016-0881-8

2016

Prostate cancer gene regulatory network inferred from RNA-seq data

Peer-reviewed

Open access

DOI

10.2174/1389202919666181107122005

2019

Identifying differentially expressed transcripts from RNA-seq data with biological variation

Peer-reviewed

Open access

DOI

10.1093/bioinformatics/bts260

2012

Fast and accurate approximate inference of transcript expression from RNA-seq data

Peer-reviewed

DOI

10.1093/bioinformatics/btv483

2015

Assessing allele-specific expression across multiple tissues from RNA-seq read data

Peer-reviewed

DOI

10.1093/bioinformatics/btv074

2015

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability

Peer-reviewed

Open access

DOI

10.1371/journal.pone.0126545

2015

Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments

Peer-reviewed

Open access

DOI

10.1093/bioinformatics/btab486

2021

Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline

Peer-reviewed

DOI

10.1093/bib/bbv069

2015

Displaying results 1 - 10 / 17176

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RNA-seq Data Analysis:A Practical Approach

Novel ZNF414 activity characterized by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data

A survey of best practices for RNA-seq data analysis

Prostate cancer gene regulatory network inferred from RNA-seq data

Identifying differentially expressed transcripts from RNA-seq data with biological variation

Fast and accurate approximate inference of transcript expression from RNA-seq data

Assessing allele-specific expression across multiple tissues from RNA-seq read data

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability

Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments

Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline

RNA-seq Data Analysis:A Practical Approach

Novel ZNF414 activity characterized by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data

A survey of best practices for RNA-seq data analysis

Prostate cancer gene regulatory network inferred from RNA-seq data

Identifying differentially expressed transcripts from RNA-seq data with biological variation

Fast and accurate approximate inference of transcript expression from RNA-seq data

Assessing allele-specific expression across multiple tissues from RNA-seq read data

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability

Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments

Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline

Publications - Research.fi - 17176 results

Publications - 17 176search results

Filter results

RNA-seq Data Analysis:A Practical Approach

Novel ZNF414 activity characterized by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data

A survey of best practices for RNA-seq data analysis

Prostate cancer gene regulatory network inferred from RNA-seq data

Identifying differentially expressed transcripts from RNA-seq data with biological variation

Fast and accurate approximate inference of transcript expression from RNA-seq data

Assessing allele-specific expression across multiple tissues from RNA-seq read data

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability

Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments

Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline

RNA-seq Data Analysis:A Practical Approach

Novel ZNF414 activity characterized by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data

A survey of best practices for RNA-seq data analysis

Prostate cancer gene regulatory network inferred from RNA-seq data

Identifying differentially expressed transcripts from RNA-seq data with biological variation

Fast and accurate approximate inference of transcript expression from RNA-seq data

Assessing allele-specific expression across multiple tissues from RNA-seq read data

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability

Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments

Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline